2011 Archive: Scientific Publications from Morgridge Institute Researchers
Proteomics and pluripotency.
December 2011 [Epub October 15, 2011]
Brumbaugh J., Rose C.M., Phanstiel D.H., Thomson J.A. and Coon J.J.
Crit. Rev. Biochem. Mol. Biol. 6, 493-506
[PubMed]
December 2011 [Epub October 15, 2011]
Brumbaugh J., Rose C.M., Phanstiel D.H., Thomson J.A. and Coon J.J.
Crit. Rev. Biochem. Mol. Biol. 6, 493-506
[PubMed]
High purity human induced pluripotent stem cell (hiPSC) derived cardiomyocytes: Electrophysiological properties of action potentials and ionic currents.
November 2011 [Epub September 2, 2011]
Ma J., Guo L., Fiene S.J., Anson B.D., Thomson J.A., Kamp T.J., Kolaja K.L., Swanson B.J. and January C.T.
Am. J. Physiol. Heart Circ. Physiol. 301(5), H2006-17.
[PubMed]
November 2011 [Epub September 2, 2011]
Ma J., Guo L., Fiene S.J., Anson B.D., Thomson J.A., Kamp T.J., Kolaja K.L., Swanson B.J. and January C.T.
Am. J. Physiol. Heart Circ. Physiol. 301(5), H2006-17.
[PubMed]
Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.
October 27, 2011
Sengupta S., Bolin J.M., Ruotti V., Nguyen B.K., Thomson J.A., Elwell A.L. and Stewart R.
J. Vis. Exp. 56 doi: 10.3791/3340
[PubMed]
October 27, 2011
Sengupta S., Bolin J.M., Ruotti V., Nguyen B.K., Thomson J.A., Elwell A.L. and Stewart R.
J. Vis. Exp. 56 doi: 10.3791/3340
[PubMed]
Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.
October 2011 [Epub August 30, 2011]
Hawkins R.D., Hon G.C., Yang C., Antosiewicz-Bourget J.E., Lee L.K., Ngo Q.M., Klugman S., Ching K.A., Edsall L.E., Ye Z., Kuan S., Yu P., Liu H., Zhang X., Green R.D., Lobanenkov V.V., Stewart R., Thomson J.A. and Ren B.
Cell Res. 21(10), 1393-1409.
[PubMed]
October 2011 [Epub August 30, 2011]
Hawkins R.D., Hon G.C., Yang C., Antosiewicz-Bourget J.E., Lee L.K., Ngo Q.M., Klugman S., Ching K.A., Edsall L.E., Ye Z., Kuan S., Yu P., Liu H., Zhang X., Green R.D., Lobanenkov V.V., Stewart R., Thomson J.A. and Ren B.
Cell Res. 21(10), 1393-1409.
[PubMed]
Proteomic and phosphoproteomic comparison of human ES and iPS cells.
September 11, 2011
Phanstiel D.H., Brumbaugh J., Wenger C.D., Tian S., Probasco M.D., Bailey D.J., Swaney D.L., Tervo M.A., Bolin J.M., Ruotti V., Stewart R., Thomson J.A. and Coon J.J.
Nat. Methods. 8(10), 821-827.
[PubMed]
September 11, 2011
Phanstiel D.H., Brumbaugh J., Wenger C.D., Tian S., Probasco M.D., Bailey D.J., Swaney D.L., Tervo M.A., Bolin J.M., Ruotti V., Stewart R., Thomson J.A. and Coon J.J.
Nat. Methods. 8(10), 821-827.
[PubMed]
Generation of red blood cells from human induced pluripotent stem cells.
September 2011 [Epub March 24, 2011]
Dias J., Gumenyuk M., Kang H., Vodyanik M., Yu J., Thomson J. and Slukvin I.
Stem Cells Dev. 20(9), 1639-1647.
[PubMed]
September 2011 [Epub March 24, 2011]
Dias J., Gumenyuk M., Kang H., Vodyanik M., Yu J., Thomson J. and Slukvin I.
Stem Cells Dev. 20(9), 1639-1647.
[PubMed]
Human lymphoblastoid B cell lines reprogrammed to EBV-free induced pluripotent stem cells.
August 18, 2011 [Epub June 27, 2011]
Rajesh D., Dickerson S.J., Yu J., Brown M.E., Thomson J.A. and Seay N.J.
Blood.118(7), 1797-1800.
[PubMed]
August 18, 2011 [Epub June 27, 2011]
Rajesh D., Dickerson S.J., Yu J., Brown M.E., Thomson J.A. and Seay N.J.
Blood.118(7), 1797-1800.
[PubMed]
Introducing an on-line adaptive procedure for prostate image guided intensity modulate proton therapy.
August 7, 2011 [Epub July 19, 2011]
Zhang M., Westerly D.C. and Mackie T.R.
Phys. Med. Biol. 56(15), 4947-4965.
[PubMed]
August 7, 2011 [Epub July 19, 2011]
Zhang M., Westerly D.C. and Mackie T.R.
Phys. Med. Biol. 56(15), 4947-4965.
[PubMed]
Optic vesicle-like structures derived from human pluripotent stem cells facilitate a customized approach to retinal disease treatment.
August 2011 [Epub June 15, 2011]
Meyer J.S., Howden S.E., Wallace K.A., Verhoeven A.D., Wright L.S., Capowski E.E., Pinilla I., Martin J.M., Tian S., Stewart R., Pattnaik B., Thomson J. and Gamm D.M.
Stem Cells. 29(8), 1206-1218.
[PubMed]
August 2011 [Epub June 15, 2011]
Meyer J.S., Howden S.E., Wallace K.A., Verhoeven A.D., Wright L.S., Capowski E.E., Pinilla I., Martin J.M., Tian S., Stewart R., Pattnaik B., Thomson J. and Gamm D.M.
Stem Cells. 29(8), 1206-1218.
[PubMed]
Chemically defined conditions for human iPSC derivation and culture
May 10, 2011 [Epub April 10, 2011]
Chen G., Gulbranson D.R., Hou Z., Bolin J.M., Ruotti V., Probasco M.D., Smuga-Otto K., Howden S.E., Diol N.R., Propson N.E., Wagner R., Lee G.O. , Antosiewicz-Bourget J., Teng J.M.C. and Thomson J.A.
Nat. Methods. 8(5), 424-429.
[News brief]
[PubMed]
May 10, 2011 [Epub April 10, 2011]
Chen G., Gulbranson D.R., Hou Z., Bolin J.M., Ruotti V., Probasco M.D., Smuga-Otto K., Howden S.E., Diol N.R., Propson N.E., Wagner R., Lee G.O. , Antosiewicz-Bourget J., Teng J.M.C. and Thomson J.A.
Nat. Methods. 8(5), 424-429.
[News brief]
[PubMed]
Genetic correction and analysis of induced pluripotent stem cells from a patient with gyrate atrophy
April 19, 2011 [Epub April 4, 2011]
Howden S., Gore A., Li A., Fung H., Nisler B.S., Nie J., Chen G. McIntosh B.E., Gulbranson D.R., Diol N.R., Taapken S.M., Vereide D.T., Montgomery K.D., Zhang K., Gamm D.M. and Thomson J.A.
Proc Natl Acad Sci USA. 108(16), 6537-6542.
[News release]
[PubMed]
April 19, 2011 [Epub April 4, 2011]
Howden S., Gore A., Li A., Fung H., Nisler B.S., Nie J., Chen G. McIntosh B.E., Gulbranson D.R., Diol N.R., Taapken S.M., Vereide D.T., Montgomery K.D., Zhang K., Gamm D.M. and Thomson J.A.
Proc Natl Acad Sci USA. 108(16), 6537-6542.
[News release]
[PubMed]
TF-cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM).
April 15, 2011
Nie J., Stewart R., Ruan F., Thomson J.A., Zhang H., Cui X. and Wei H.
BMC Syst. Biol. 5(1), 53.
[PubMed]
April 15, 2011
Nie J., Stewart R., Ruan F., Thomson J.A., Zhang H., Cui X. and Wei H.
BMC Syst. Biol. 5(1), 53.
[PubMed]
Efficient generation of transgene-free induced pluripotent stem cells from normal and neoplastic bone marrow and cord blood mononuclear cells.
April 7, 2011 [Epub February 4, 2011]
Hu K., Yu J., Suknuntha K., Tian S., Montgomery K., Choi K.D., Stewart R., Thomson J.A. and Slukvin I.I.
Blood. 117(14), e109-e119.
[PubMed]
April 7, 2011 [Epub February 4, 2011]
Hu K., Yu J., Suknuntha K., Tian S., Montgomery K., Choi K.D., Stewart R., Thomson J.A. and Slukvin I.I.
Blood. 117(14), e109-e119.
[PubMed]
FGF2 sustains NANOG and switches the outcome of BMP4 induced human embryonic stem cell differentiation
March 4, 2011
Yu P., Pan G., Yu J. and Thomson J.A.
Cell Stem Cell. 8(3), 326-334.
[Pubmed]
March 4, 2011
Yu P., Pan G., Yu J. and Thomson J.A.
Cell Stem Cell. 8(3), 326-334.
[Pubmed]
Hotspots of aberrant epigenomic reprogramming in human iPS cells.
March 3, 2011 [Epub February 2, 2011]
Lister R., Pelizzola M., Kida Y.S., Hawkins R.D., Nery J.R., Hon G., Antosiewicz-Bourget J., O’Malley R., Castanon R., Downes M., Yu R., Stewart R., Ren B., Thomson J.A., Evans R.M. and Ecker J.R.
Nature. 471(7336), 68-73.
[PubMed]
March 3, 2011 [Epub February 2, 2011]
Lister R., Pelizzola M., Kida Y.S., Hawkins R.D., Nery J.R., Hon G., Antosiewicz-Bourget J., O’Malley R., Castanon R., Downes M., Yu R., Stewart R., Ren B., Thomson J.A., Evans R.M. and Ecker J.R.
Nature. 471(7336), 68-73.
[PubMed]
Somatic coding mutations in human induced pluripotent stem cells.
March 3, 2011
Gore A., Li Z., Fung H., Young J., Agarwal S., Antosiewicz-Bourget J., Canto I., Israel M., Kiskinis E., Lee J., Loh Y., Manos P.D., Montserrat N., Wilbert M., Yu J., Kirkness E., Izpisua Belmonte J.C., Rossi D.J., Thomson J.A., Eggan K., Daley G.Q., Goldstein L.S.B. and Zhang K.
Nature. 471(7336), 63-67.
[PubMed]
March 3, 2011
Gore A., Li Z., Fung H., Young J., Agarwal S., Antosiewicz-Bourget J., Canto I., Israel M., Kiskinis E., Lee J., Loh Y., Manos P.D., Montserrat N., Wilbert M., Yu J., Kirkness E., Izpisua Belmonte J.C., Rossi D.J., Thomson J.A., Eggan K., Daley G.Q., Goldstein L.S.B. and Zhang K.
Nature. 471(7336), 63-67.
[PubMed]
A guide to building education partnerships.
2011.
Hora M. and Millar S.
Stylus Publishing. 268 pp.
http://stylus.styluspub.com/Books/BookDetail.aspx?productID=241232
