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2011
Sengupta S, Bolin JM, Ruotti V, Nguyen BK, Thomson JA, Elwell AL, Stewart R. “Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.” J Vis Exp (2011). 56. [PubMed]Brumbaugh J, Rose CM, Phanstiel DH, Thomson JA, Coon JJ. “Proteomics and pluripotency.” Crit Rev Biochem Mol Biol (2011). 46(6):493-506. [Epub October 15, 2011] [PubMed]
Coon DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. "Protoemic and phosphoproteomic comparison of human ES and iPS cells." Nature Methods. [Epub September 11, 2011] [PubMed]
Ma J, Guo L, Fiene SJ, Anson BD, Thomson JA, Kamp TJ, Kolaja KL, Swanson BJ, January CT. “High purity human induced pluripotent stem cell (hiPSC) derived cardiomyocytes: Electrophysiological properties of action potentials and ionic currents.” Am J Physiol Heart Circ Physiol. [Epub September 2, 2011] [PubMed]
Hawkins RD, Hon GC, Yang C, Antosiewicz-Bourget JE, Lee LK, Ngo QM, Klugman S, Ching KA, Edsall LE, Ye Z, Kuan S, Yu P, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Ren B. “Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.” Cell Res. [Epub August 30, 2011] [PubMed]
Rajesh D, Dickerson SJ, Yu J, Brown ME, Thomson JA, Seay NJ. “Human lymphoblastoid B cell lines reprogrammed to EBV-free induced pluripotent stem cells.” Blood (2011).118(7): 1797-800. [Epub June 27, 2011] [PubMed]
Meyer JS, Howden SE, Wallace KA, Verhoeven AD, Wright LS, Capowski EE, Pinilla I, Martin JM, Tian S, Stewart R, Pattnaik B, Thomson J, Gamm DM. “Optic vesicle-like structures derived from human pluripotent stem cells facilitate a customized approach to retinal disease treatment.” Stem Cells (2011). 29(8): 1206-18. [Epub June 15, 2011] [PubMed]
Chen G, Gulbranson D, Hou Z, Bolin J, Probasco MD, Smuga-Otto K, Howden S, Diol N, Propson NE, Wagner R, Lee GO, Antosiewicz-Bourget J, Teng JMC, Thomson JA. “Chemically defined conditions for human iPS cell derivation and culture.” Nature Methods (2011). 8(5): 424-9. [Epub April 10, 2011] [PubMed]
Howden SE, Gore A, Li Zhe, Fung H, Nisler BS, Nie J, Chen G, McIntosh BE, Gulbranson DR, Diol NR, Taapken SM, Vereide DT, Montgomery KD, Zhang K, Gamm D, Thomson JA. “Genetic correction and analysis of induced pluripotent stem cells from a patient with gyrate atrophy.” Proc Natl Acad Sci USA (2011). 108(16): 6537-42. [Epub April 4, 2011] [PubMed]
Nie J, Stewart R, Ruan F, Thomson JA, Zhang H., Cui X, Wei H. “TF-cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM).” BMC Syst Biol (2011). 5(1): 53. [Epub April 15, 2011] [PubMed]
Hu K, Yu J, Suknuntha K, Tian S, Montgomery K, Choi KD, Stewart R, Thomson JA, Slukvin II. “Efficient generation of transgene-free induced pluripotent stem cells from normal and neoplastic bone marrow and cord blood mononuclear cells.” Blood (2011). 117(14): e109-19. [Epub February 4, 2011] [PubMed]
Dias J, Gumenyuk M, Kang H, Vodyanik M, Yu J, Thomson J, Slukvin I. “Generation of red blood cells from human induced pluripotent stem cells.” Stem Cells Dev (2011). 20(9): 1639-47. [Epub March 24, 2011] [PubMed]
Yu P, Pan G, Yu J, Thomson JA. “FGF2 sustains NANOG and switches the outcome of BMP4 induced human embryonic stem cell differentiation.” Cell Stem Cell (2011). 8(3): 326-34. [Pubmed]
Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O’Malley R, Castanon R, Downes M, Yu R, Stewart R, Ren B, Thomson JA, Evans RM, Ecker JR. “Hotspots of aberrant epigenomic reprogramming in human iPS cells.” Nature (2011). 471(7336): 68-73. [Epub February 2, 2011] [PubMed]
Gore A, Li Z, Fung H, Young J, Agarwal S, Antosiewicz-Bourget J, Canto I, Israel M, Kiskinis E, Lee J, Loh Y, Manos PD, Montserrat N, Wilbert M, Yu J, Kirkness E, Izpisua Belmonte JC, Rossi DJ, Thomson JA, Eggan K, Daley GQ, Goldstein LSB, Zhang K. “Somatic coding mutations in human induced pluripotent stem cells.” Nature (2011). 471(7336): 63-7. [PubMed]
2010
Hu BY, Weick JP, Yu J, Ma LX, Zhang XQ, Thomson JA, Zhang SC. “Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency.” Proc Natl Acad Sci USA (2010). 107(9): 4335-40. [PubMed]
Cho M, Xiao Y, Nie J, Stewart R, Csordas A, Oh S, Thomson JA, Soh H. "Quantitative selection of DNA aptamers through microfluidic selection and high throughput sequencing.” Proc Natl Acad Sci USA (2010). 107(35): 15373-8. [PubMed]
Hawkins R, Hon G, Lee L, Ngo Q, Lister R, Pelizzola M, Kuan, S, Edsall L, Ye Z, Espinoza C, Antosiewicz-Bourget J, Agarwahl S, Shen L, Ruotti V, Wang W, Stewart R, Thomson JA, Ecker J, Ren B. “Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.” Cell Stem Cell (2010). 6: 1-13. [PubMed]
Chen C, Hou Z, Gulbranson D, Thomson JA. "Actin-myosin contractility is responsible for the reduced viability of dissociated human embryonic stem cells." Cell Stem Cell (2010). 7(2): 240-248. [PubMed]
Sengupta S, Ruotti V, Bolin J, Elwell A, Hernandez A, Thomson JA, Stewart R. “Highly consistent, fully representative mRNA-Seq libraries from 1000 cells.” BioTechniques (2010). 49(6): 898-904. [PubMed]
Bernstein BE, Stamatoyannopoulos JA, Costello JF, Ren B, Milosavljevic A, Meissner A, Kellis M, Marra MM, Beaudet AL, Ecker JR, Farnham PJ, Hirst M, Lander ES, Mikkelsen TS, Thomson JA. “The NIH Roadmap Epigenomics Mapping Consortium.” Nature Biotech (2010). 28(10): 1045-8. [PubMed]
Winkler T, Cantilena A, Metais JY, Xu X, Nguyen AD, Borate B, Antosiewicz-Bourget JE, Wolfsberg TG, Thomson JA, Dunbar, CE. “No evidence for clonal selection due to lentiviral integration sites in human induced pluripotent stem cells.” Stem Cells (2010). 28(4): 687-94. [PubMed]
Li B, Ruotti V, Stewart R, Thomson JA, Dewey C. “RNA-Seq gene expression estimation with read mapping uncertainty.” Bioinformatics (2010). 26(4): 493-500. [PubMed]
Mohr JC, Zhang J, Azarin SM, Soerens AG, de Pablo JJ, Thomson JA, Lyons GE, Palecek SP, Kamp TJ. "The microwell control of embryoid body size in order to regulate cardiac differentiation of human embryonic stem cells." Biomaterials (2010). 31: 1885-93. [PubMed]
Vodyanik MA, Yu J, Zhang X, Tian S, Stewart R, Thomson JA, Slukvin II. “A mesoderm-derived precursor for mesenchymal stem and endothelial cells.” Cell Stem Cell (2010). 7(6): 718-29. [PubMed]
2009
Ebert AD, Yu J, Rose FF, Mattis VB, Lorson CL, Thomson JA, Svendsen CN. "Induced pluripotent stem cells from a spinal muscular atrophy patient." Nature (2009). 457(7227): 277-80. [PubMed]
Zwaka TP, Thomson JA. "Homologous recombination in human embryonic stem cells." In Essentials of Stem Cell Biology, 2nd edition, edited by R. Lanza. Elsevier Academic Press, 2009.
Yu J, Thomson JA. "Induced pluripotent stem cell derivation.” In Essentials of Stem Cell Biology, 2nd edition, edited by R. Lanza. Elsevier Academic Press, 2009.
Choi K-D, Yu J, Smuga-Otto K, Salvagiotto G, Rehrauer W, Vodyanik M, Thomson JA, Slukvin I. "Hematopoietic and endothelial differentiation of human induced pluripotent stem cells." Stem Cells (2009). 27(3): 559-67. [PubMed]
Swaney DL, Wenger CD, Thomson JA, Coon JJ. “Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry.” Proc Natl Acad Sci USA (2009). 106(4): 995-1000. [PubMed]
Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Crawford GE, Kellis M, Ren B. “Histone modifications at human enhancers reflect global cell-type-specific gene expression.” Nature (2009). 459: 108-12. [PubMed]
Zhang J, Wilson GF, Soerens AG, Koonce CH, Yu J, Thomson JA, Kamp TJ. "Functional cardiomyocytes derived from human induced pluripotent stem cells." Circulation Research (2009). 104: e30-41. [PubMed]
Deng J, Shoemaker R, Xie B, Gore A, Leproust E, Antosiewicz-Bourget J, Egli D, Maherali N, Park I-H, Yu J, Daley G, Eggan K, Hochedlinger K, Thomson JA, Wang W, Gao Y, Zhang K. “Digital DNA methylation analysis of stem cell reprogramming by targeted bisulfite sequencing.” Nature Biotechnol (2009). 27(4): 353-60.
Xu N, Papagiannakopoulos T, Pan G, Thomson JA, Kosik K. “MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells.” Cell (2009). 137(4): 647-58. [PubMed]
Yu J, Hu K, Smuga-Otto K, Tian S, Stewart R, Slukvin II, Thomson JA. “Human induced pluripotent stem cells free of vector and transgene sequences.” Science (2009). 324(5928): 797-801. [PubMed]
Sengupta S, Nie J, Yang C, Tian S, Jonsdottir G, Ruotti V, Wei H, Stewart R, Thomson JA. "MicroRNA 92b controls the G1/S checkpoint gene p57 in human embryonic stem cells." Stem Cells (2009). 27: 1524-8.
Kim YJ, Teletia N, Ruotti V, Maher CA, Chinnaiyan AM, Stewart R, Thomson JA, Patel JM. “ProbeMatch: Rapid alignment of oligonucleotides to a genome allowing both gaps and mismatches.” Bioinformatics (2009). 25(11): 1424-5. [PubMed]
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo LQ, Edsall LE, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR. "Human DNA methylomes at base resolution show widespread epigenomic differences." Nature (2009). 462(7271): 315-22. [Epub Oct 14, 2009] [PubMed]
2008
Levenstein ME, Berggren WT, Lee JE, Conard KR, Llanas RA, Wagner RJ, Smith LM, Thomson JA. "Secreted proteoglycans directly mediate human embryonic stem cell-basic fibroblast growth factor 2 interactions critical for proliferation." Stem Cells (2008). 26(12): 3099-107. [PubMed]
Salvagiotto G, Zhao Y, Vodyanik M, Ruotti V, Stewart R, Marra M, Thomson J, Eaves C, Slukvin I. "Molecular profiling reveals similarities and differences between primitive subsets of hematopoietic cells generated in vitro from human embryonic stem cells and in vivo during embryogenesis." Exp Hematol (2008). 36(10): 1377-89. [PubMed]
Thomson JA, Yu J. "Human embryonic and human induced pluripotent stem cell lines." Journal of Medicinal Science (2008). (3): 115-20.
Bloushtain-Qimron N, Yao J, Snyder EL, Shipitsin M, Campbell LL, Mani SA, Hu M, Chen H, Ustyansky V, Antosiewicz JE, Argani P, Halushka MK, Thomson JA, Pharoah P, Porgador A, Sukumar S, Parsons R, Richardson AL, Stampfer MR, Gelman RS, Nikolskaya T, Nikolsky Y, Polyak K. "Cell type-specific DNA methylation patterns in the human breast." Proc Natl Acad Sci USA (2008). 105(37): 14076-81. [PubMed]
Xu RH, Sampsell-Barron TL, Gu F, Root S, Peck RM, Pan G, Yu J, Antosiewicz-Bourget J, Tian S, Stewart R, Thomson JA. "NANOG is a direct target of TGFbeta/activin-mediated SMAD signaling in human ESCs. Cell Stem Cell (2008). 3(2): 196-206. [PubMed]
Yu J, Thomson JA. "Pluripotent stem cell lines." Genes Dev (2008). 22(15): 1987-97. Review. [PubMed]
Dejosez M, Krumenacker JS, Zitur LJ, Passeri M, Chu LF, Songyang Z, Thomson JA, Zwaka TP. "Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells." Cell (2008). 133(7): 1162-74. Erratum in: Cell (2008). 134(4): 692. [PubMed]
Ananiev GE, Goldstein S, Runnheim R, Forrest DK, Zhou S, Potamousis K, Churas CP, Bergendahl V, Thomson JA, Schwartz DC. "Optical mapping discerns genome wide DNA methylation profiles." BMC Mol Biol (2008). 9:68. [PubMed]
Fujita J, Crane AM, Souza MK, Dejosez M, Kyba M, Flavell RA, Thomson JA, Zwaka TP. "Caspase activity mediates the differentiation of embryonic stem cells." Cell Stem Cell (2008). 2(6): 595-601. [PubMed]
Wei H, Kuan PF, Tian S, Yang C, Nie J, Sengupta S, Ruotti V, Jonsdottir GA, Keles S, Thomson JA, Stewart R. "A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets." Nucleic Acids Res (2008). 36(9): 2926-38. [PubMed]
Pommer MS, Zhang Y, Keerthi N, Chen D, Thomson JA, Meinhart CD, Soh HT. "Dielectrophoretic separation of platelets from diluted whole blood in microfluidic channels." Electrophoresis (2008). 29(6): 1213-8. [PubMed]
Phanstiel D, Brumbaugh J, Berggren WT, Conard K, Feng X, Levenstein ME, McAlister GC, Thomson JA, Coon JJ. "Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells." Proc Natl Acad Sci USA (2008). 105(11): 4093-8. [PubMed]
2007
Lee M, Hook B, Pan G, Kershner AM, Meerritt C, Seydoux G, Thomson JA, Wickens M, Kimble J. "Conserved regulation of MAP kinase expression by PUF RNA-binding proteins." PLoS Genetics (2007). 3(12): e233. [PLOS article] [PubMed]
Yu J, Vodyanik M, Smuga-Otto K, Frane J, Antosiewicz-Bourget J, Frane J, Tian S, Nie J, Jonsdottir GA, Ruotti V, Stewart R, Slukvin II, Thomson JA."Induced pluripotent stem cell lines derived from human somatic cells." Science (2007). 318: 1917-20. [PubMed]
Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA. "Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells." Cell Stem Cell (2007). 1(3): 299-312. [PubMed]
Chen D, Wang P, Lewis RL, Daigh CA, Ho C, Chen X, Thomson JA, Kendziorski CM. A microarray analysis of the emergence of embryonic definitive hematopoiesis." Exp Hem (2007). 35: 1344-57. [PubMed]
Pan G, Thomson JA. "Nanog and transcriptional networks in embryonic stem cell pluripotency." Cell Res (2007). 17: 42-9. [PubMed]
Rajesh R, Chinnasamy N, Mitalipov S, Wolf D, Slukvin I, Thomson J, Shaaban A. "Differential requirements for hematopoietic commitment between human and rhesus embryonic stem cells." Stem Cells (2007). 25:490-9. [PubMed]
Derda R, Li L, Orner B, Lewis RL, Thomson JA, Kiessling LL. "Defined substrates for human embryonic stem cell growth identified from surface arrays." ACS Chem Biol (2007). 2(5): 347-55. [PubMed]
Hirst N, Delaney A, Rogers S, Schnerch A, Persaud D, O’Connor M, Zeng T, Moksa M, Menzies S, Baross A, Khattra J, Siddiqui A, Holt R, Jones S, Thomson JA, Eaves C, Marra M. "LongSAGE profiling of nine human embryonic stem cell lines." Genome Biol (2007). 8(6): R113. [PubMed]
He JQ, January C, Thomson J, Kamp T. "Human embryonic stem cell-derived cardiomyocytes: Drug discovery and safety pharmacology." Expert Opinion on Drug Discovery (2007). 2: 739-53.
2006
Vodyanik MA, Thomson JA, Slukvin II. "Leukosialin (CD43) defines hematopoietic progenitors in human embryonic stem cell differentiation cultures." Blood (2006). 108(6): 2095-105. [PubMed]
Kameda T, Smuga-Otto K, Thomson JA. "A severe de novo methylation of episomal vectors by human ES cells." Biochem and Biophys Res Comm (2006). 349(4): 1269-77. [PubMed]
Slukvin II, Vodyanik MA, Thomson JA, Gumenyuk M, Choi K. "Directed differentiation of human embryonic stem cells into functional dendritic cells through the myeloid pathway." J Immunol (2006). 176(5): 2924-32. [PubMed]
Narayan AD, Chase JL, Lewis RL, Kaufman DS, Thomson JA, Zanjani ED. "Human embryonic stem cell-derived hematopoietic cells are capable of engrafting primary as well as secondary fetal sheep recipients." Blood (2006). 107(5): 2180-3. [PubMed]
Levenstein ME, Ludwig TE, Xu R, Llanas RA, VanDenHeuvel-Kramer K, Manning D, Thomson JA. "Basic FGF support of human embryonic stem cell self-renewal." Stem Cells (2006). 24(3): 568-74. [PubMed]
Yu J, Vodyanik MA, He P, Slukvin II, Thomson JA. "Human embryonic stem cells reprogram myeloid precursors following cell-cell fusion." Stem Cells (2006). 24(1): 168-76. [PubMed]
Ludwig TE, Bergendahl V, Levenstein ME, Yu J, Probasco MD, Thomson JA. "Feeder-independent culture of human embryonic stem cells." Nat Methods (2006). 3(8): 637-46. [PubMed]
Ludwig TE, Levenstein ME, Jones J, Berggren W, Mitchen E, Frane J, Crandall L, Daigh CA, Conard K, Piekarczyk M, Llanas R, Thomson JA. "Derivation of human embryonic stem cells in defined conditions." Nat Biotechnol (2006). 24(2): 185-7. [PubMed]
2005
Yu J, Vodyanik MA, He P, Slukvin II, Thomson JA. "Human embryonic stem cells reprogram myeloid precursors following cell-cell fusion." Stem Cells (2005). [PubMed]
Kameda T, Thomson JA. "The human ERas gene has an upstream premature polyadenylation signal that results in a truncated, non-coding transcript." Stem Cells (2005). [PubMed]
Yan Y, Yang D, Zarnowska ED, Du Z, Werbel B, Valliere C, Pearce RA, Thomson JA, Zhang SC. "Directed differentiation of dopaminergic neuronal subtypes from human embryonic stem cells." Stem Cells (2005). 23(6): 781-90. [PubMed]
Xu RH, Peck RM, Li DS, Feng X, Ludwig T, Thomson JA. "Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells." Nat Methods (2005). 2(3): 185-90. [PubMed]
Zwaka TP, Thomson JA. "Differentiation of human embryonic stem cells occurs through symmetric cell division." Stem Cells (2005). 23(2): 146-9. [PubMed]
Vodyanik MA, Bork JA, Thomson JA, Slukvin II."Human embryonic stem cell-derived CD34+ cells: efficient production in the coculture with OP9 stromal cells and analysis of lymphohematopoietic potential." Blood (2005). 105(2): 617-26. [PubMed]
Zwaka TP, Thomson JA. "A germ cell origin of embryonic stem cells?" Development (2005). 132(2): 227-33. [PubMed]
2004
Orner BP, Derda R, Lewis RL, Thomson JA, Kiessling LL. "Arrays for the combinatorial exploration of cell adhesion." J Am Chem Soc (2004). 126(35): 10808-9. [PubMed]
Gerami-Naini B, Dovzhenko OV, Durning M, Xu R, Thomson JA, Golos TG. "Trophoblast differentiation in embryoid bodies derived from human embryonic stem cells" Endocrinology (2004). 145: 1517-24. [PubMed]
Kaufman DS, Lewis RL, Hanson ET, Auerbach R, Thomson JA. “Functional endothelial cells derived from rhesus monkey embryonic stem cells.” Blood (2004). 103: 1325-32. [PubMed]
Draper JS, Smith K, Gokhale P, Moore HD, Maltby E, Johnson J, Meisner L, Zwaka TP, Thomson JA, Andrews PW. “Karyotypic evolution of human Embryonic Stem (ES) cells in culture: recurrent gain of chromosomes 17 (17q) and 12”. Nature Biotech (2004). 22: 53-4. [PubMed]
2003
Sperger JM, Chen X, Draper JS, Antosiewicz JE, Chon C, Jones S, Brooks JD, Andrews PW, Brown PO, Thomson JA. “Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors.” Proc Natl Acad Sci USA (2003). 100: 13350-5. [PubMed]
Marshall VS, Browne MA, Knowles LA, Golos TG, Thomson JA. “Ovarian stimulation of marmoset monkeys (Callithrix jacchus) using recombinant human follicle stimulating hormone.” J Med Primatol (2003). 32: 57-66. [PubMed]
He J, Ma Y, Lee Y, Thomson JA, Kamp TJ. “Human embryonic stem cells develop into multiple types of cardiac myocytes: action potential characterization.” Circulation Research (2003). 93: 32-9. [PubMed]
Ma Y, Ramezani A, Lewis R, Hawley RG, Thomson JA. “High level sustained transgene expression in human embryonic stem cells using lentiviral vectors.” Stem Cells (2003). 21: 111-7. [PubMed]
Zwaka TP, Thomson JA. “Homologous recombination in human embryonic stem cells.” Nature Biotech (2003). 21: 319-21. [PubMed]
2002
Xu R, Chen X, Li DS, Li R, Addicks GC, Glennon C, Zwaka TP, Thomson JA. “BMP4 initiates human embryonic stem cell differentiation to trophoblast.” Nature Biotech (2002). 20: 1261-4. [PubMed]
Henderson J, Draper JS, Baillie HS, Fishel S, Thomson JA, Moore H, Andrews PW. “Pre-implantation human embryos and embryonic stem cells show comparable expression of stage specific embryonic antigens. “ Stem Cells (2002). 20: 329-37. [PubMed]
Kaufman DS, Thomson JA. “Human ES cells: Hematopoiesis and transplantation strategies.” J. Anat (2002). 200: 243-8. [PubMed]
Draper JS, Pigott CP, Thomson JA, Andrews PW. “Surface antigens of human embryonic stem cells: Changes upon differentiation in culture.” J. Anat (2002). 200: 249-58. [PubMed]
Cooper S, Bennett W, Andrade J, Reubinof BE, Thomson JA, Pera MF. “Biochemical properties of a keratan sulphate/chondroitin sulphate proteoglycan expressed in primate pluripotent stem cells.” J. Anat (2002). 200: 259-65. [PubMed]
Wolfgang MJ, Marshall VS, Eisele SG, Schotzko ML, Thomson JA, Golos TG. “An efficient method for expressing transgenes in nonhuman primate embryos using a stable episome.” Mol. Reprod. Dev (2002). 62: 69-73. [PubMed]
2001
Zhang S-C, Wernig M, Duncan ID, Brustle O, Thomson JA. "In vitro differentiation and transplantation of human ES cell-derived neural precursors." Nature Biotech (2001). 19: 1129-33. [PubMed]
Wolfgang MJ, Eisele SG, Browne MA, Schotzko ML, Garthwaite MA, Durning M, Ramezani A, Hawley RG, Thomson JA, Golos TG. “Lentiviral gene transfer into primate preimplantation embryos elicits a maternal anti-placental immune response.” Proc Natl Acad Sci USA (2001). 98: 10728-32. [PubMed]
Allen TM, Mothé BR, Sidney J, Jing P, Dzuris JL, Vogel TU, Leibl ME, O’Conner DH, Wang X, Wussow MC, Thomson JA, Altman JD, Watkins DI, Sette A. “CD8(+) lymphocytes from simian immunodeficiency virus-infected rhesus macaques recognize 14 different epitopes bound by the major histocompatibility complex class I molecule mamu-A*01: Implications for vaccine design and testing.” J Virol (2001). 75: 738-49. [PubMed]
Jacobson L, Kahan B, Djamali A, Thomson JA, Odorico JS. “Differentiation of endoderm derivatives, pancreas and intestine, from rhesus embryonic stem cells.” Trans Proc (2001). 33: 674. [PubMed]
Li F, Lu L, Vida L, Thomson JA, Honig GR. “Bone morphogenetic protein-4 (BMP-4) induces efficient hematopoietic differentiation of rhesus monkey embryonic stem (ES) cells in vitro.” Blood (2001). 98b: 335-42. [PubMed]
Odorico JS, Kaufman DS, Thomson JA. “Multilineage differentiation from human embryonic stem cell lines.” Stem Cells (2001). 19: 193-204. [PubMed]
Marshall VS, Waknitz M, Thomson JA. “Isolation and maintenance of primate embryonic stem cells.” Methods Mol Biol (2001). 158: 1-8. [PubMed]
Kaufman DS, Hanson ET, Lewis RL, Auerbach R, Thomson JA. “Hematopoietic colony forming cells derived from human embryonic stem cells.” Proc Natl Acad Sci USA (2001). 98: 10716-21. [PubMed]
2000
Amit M, Carpenter M, Inokuma M, Chiu C, Harris CP, Waknitz MA, Itskovitz-Eldor J, Thomson JA. “Clonally derived human embryonic stem cell lines maintain pluripotency and proliferative potential for prolonged periods of in vitro culture.” Dev. Biol (2000). 227(2): 271-8. [PubMed]
Kaufman DS, Odorico J, Thomson JA. “Transplantation therapies from human embryonic stem cells-circumventing immune rejection.” Regen. Med (2000). 1: 1-5.
Jones JM, Thomson JA. “Human embryonic stem cell technology.” Semin. Reprod. Med (2000). 18(2): 219-23. [PubMed]
Ramer JC, Garber RL, Steele KE, Boyson JF, O'Rourke C, Thomson JA. “Fatal lymphoproliferative disease associated with a novel gammaherpesvirus in a captive population of common marmosets.” Lab. Anim. Sci (2000). 50(1): 59-68. [PubMed]
Thomson JA, Odorico JS. “Human embryonic stem cell and germ cell lines.” Trends Biotech (2000). 18: 59-63. [PubMed]
1999 – 1996
Thomson JA, Itskovitz-Eldor J, Shapiro SS, Waknitz MA, Swiergiel JJ, Marshall VS, Jones JM. “Embryonic stem cell lines derived from human blastocysts.” Science (1998). 282: 1145-7. [PubMed]
Thomson JA, Marshall VS. “Primate embryonic stem cells.” Curr. Top. in Dev. Biol (1998). 38: 133-60. [PubMed]
Steger KK, Dykhuizen M, Mitchen J, Hinds PW, Preuninger BL, Wallace M, Thomson J, Lu Y, Pauza CD. “CD4+ T cell and CD20+ B cell changes that predict rapid disease progression after SHIV89.6PD inoculation of rhesus macaques.” J. Virol (1998). 72: 1600-5. [PubMed]
Dykhuizen M, Mitchen J, Montefiori DC, Thomson JA, Lardy H, Pauza CD. “Determinants of disease in the SIV-infected rhesus macaque: Characterizing animals with low antibody responses and rapid progression.” J. Gen. Virol (1998). 79: 2461-7. [PubMed]
Thomson JA, Marshall VS, Trojanowski JQ. “Neural differentiation of rhesus embryonic stem cells.” AMPHIS (1998). 106: 149-57. [PubMed]
Uno H, Alsum P, Zimbric ML, Houser WD, Thomson JA, Kemnitz JW. “Colon cancer in aged captive rhesus monkeys (Macaca mulatta).” J. Med. Primatol (1998). 44: 19-27. [PubMed]
First NL, Thomson JA. “From cows stem therapies?” Nature Biotech (1998). 18: 620-1. [PubMed]
Thomson JA, Marshall VS, Trojanowski JQ. “Neural differentiation of rhesus embryonic germ cells.” In Neoplastic Transformation of Testicular Germ Cells, edited by E. Rajpert-De Meyts, K.M Grigor and N.E Skakkebaek. Copenhagen: Munksgaard, 1998. 149-57.
Marshall VS, Kalishman J, Thomson JA. “Nonsurgical embryo transfer in the common marmoset monkey.” J. Med. Primatol (1997). 26: 241-7. [PubMed]
Kalishman J, Scheffler J, Paul-Murphy JR, Thomson JA. “The prevalence of cryptosporidia and giardia in a captive population of common marmosets.” Lab. Anim. Sci (1996). 46: 116-9.
Thomson JA, Scheffler J. “Hemorrhagic typhlocolitis in common marmosets associated with attaching and effacing Escherichia coli.” Lab. Anim. Sci (1996). 46: 275-9. [PubMed]
Thomson JA, Kalishman J, Golos TG, Durning M, Harris CP, Becker RA, Hearn JP. “Pluripotent cell lines derived from common marmoset (Callithrix jacchus) blastocysts.” Biol. Reprod (1996). 55: 254-9. [PubMed]
1995 – 1991
Thomson JA, Becker R, Durning M, Golos TG, Harris C, Kalishman J, Hearn JP. “Isolation of a primate embryonic stem cell line.” Proc Natl Acad Sci USA (1995). 92: 7844-8. [PubMed]
Thomson JA, Kalishman J, Hearn JP. “Non-surgical uterine stage preimplantation embryo collection from the common marmoset.” J. Med. Primatol (1994). 23: 333-6. [PubMed]
Steinberg H, Thomson JA. “Bilateral renal carcinoma in a cat.” Vet. Pathol (1994). 31: 704-5. [PubMed]
Steinberg H, Dubielzig RR, Thomson JA, Dzata G. “Primary gastrointestinal lymphosarcoma with epitheliotropism in three Shar-pei and one Boxer dog.” Vet. Pathol (1993). 30: 473. [PubMed]
Thomson JA, Iliff-Sizemore SA, Gliessman PM, Wolf DP. “Collection and fertilization potential of sperm from the Sulawesi crested black macaque (Macaca nigra).” Am. J. Primatol (1992). 28: 289-97.
Thomson JA, Hess DL, Dahl KD, Iliff-Sizemore SA, Stouffer RL, Wolf DP. “The Sulawesi crested black macaque (Macaca nigra) menstrual cycle: Changes in perineal tumescence and serum estradiol, progesterone, FSH, and LH levels.” Biol. Reprod (1992). 46: 879-84. [PubMed]
1990 – 1980
Wolf DP, Thomson JA, Zelinski-Wooten MB, Stouffer RL. “In vitro fertilization-embryo transfer in nonhuman primates: The technique and its applications.” Mol. Reprod. Dev (1990). 27: 261-80. [PubMed]
Thomson J, Solter D. “Chimeras between parthenogenetic or androgenetic blastomeres and normal embryos: allocation to inner cell mass or trophectoderm.” Dev. Biol (1989). 131: 580-3. [PubMed]
Thomson J, Solter D. “The developmental fate of androgenetic, parthenogenetic and gynogenetic cells in chimeric gastrulating mouse embryos.” Genes Dev (1988). 2: 1344-51. [PubMed]
Thomson J, Solter D. “Transgenic markers for mammalian chimeras." Roux’s Arch. Dev. Biol (1988). 197: 63-5.
Thomas WA, Thomson JA, Magnani JL, Steinberg MS. “Two distinct adhesion mechanisms in embryonic neural retinal cells: III. Functional specificity.” Dev. Biol (1981). 81: 379-85. [PubMed]
Commentaries and Book Chapters
2007 - 2005
Ludwig T, Thomson JA. "Defined culture media for human embryonic stem cells." In Human Embryonic Stem Cells (Human Cell Culture - Volume 6), edited by Masters, J., Palsson, B. and J.A. Thomson. Springer, 2007.
Ludwig T, Thomson JA. "Defined feeder-independent medium for human embryonic stem cell culture." In Current Protocols in Stem Cell Biology, edited by M. Pera. John Wiley & Sons Inc., 2007.
Yu J, Thomson JA. "Embryonic stem cells: Derivation and properties." In Principles of Regenerative Medicine, edited by A. Atala. Elsevier Academic Press, 2007.
Chang HY, Thomson JA, Chen X. "Microarray analysis of stem cells and differentiation." In Essentials of Stem Cell Biology, edited by R. Lanza. Elsevier Academic Press, 2006.
Chang H, Thomson JA, Chen X. "Microarray analysis of stem cells and differentiation." In Stem Cells Volume 2: Adult Stem Cells (a volume of Methods in Enzymology), edited by R. Lanza. Elsevier Academic Press, 2006. 420: 225-54.
Yu J, Thomson JA. "Embryonic stem cells." In Regenerative Medicine 2006. Department of Health and Human Services, 2006.
Zwaka TP, Thomson JA. "Homologous recombination in human embryonic stem cells." In Essentials of Stem Cell Biology, edited by R. Lanza. Elsevier Academic Press, 2006.
2004 – 2002
Ludwig T, Thomson JA. “Current progress in human embryonic stem cell research.” In Monitoring Stem Cell Research, A Report of the President's Council on Bioethics, 2004. 279-94.
Carpenter MK, Xu C, Daigh CA, Antosiewicz JE, Thomson JA. “Protocols for the isolation and maintenance of human embryonic stem cells.” In Human Embryonic Stem Cells, edited by A. Chiu, A and M. Rao. Humana Press, 2003.
2001 – 2000
Ouhibi N, Thomson JA, Wolf DP, Zelinski-Wooten M. “Assisted reproductive technologies and nuclear transfer in nonhuman primates.” In Assisted Reproductive Technologies, edited by D.P. Wolf and M.B. Zelinski-Wooten. Tolowa, NJ: Humana Press Inc., 2001. 253-84.
Andrews PW, Przyborski SA, Thomson JA. “Embryonal carcinoma cells as embryonic stem cells.” In Stem Cell Biology, edited by D. Marshak, R. Gardner and D. Gottlieb. Cold Spring Harbor, NY: Cold Spring Harbor Press, 2001. 231-66.
Thomson JA. “Human embryonic stem cells,” in The Human Embryonic Stem Cell Debate, edited by K. Lebacqz, S. Holland and L. Zoloth. Boston: MIT Press, 2001. 15-26.
1999 – 1998
Thomson JA. “Funding of human embryo research in the United States.” Nature Biotech (1999). 17: 312. [PubMed]
First NL, Thomson JA. “From cows stem therapies?” Nature Biotech (1998). 18: 620-1. [PubMed]
Thomson JA, Marshall VS, Trojanowski JQ. “Neural differentiation of rhesus embryonic germ cells.” In Neoplastic Transformation of Testicular Germ Cells, edited by E. Rajpert-De Meyts, K.M Grigor and N.E Skakkebaek. Copenhagen: Munksgaard, 1998. 149-57.
